January 2022 Test Revisions for Molecular Microbiology

Several Molecular Microbiology test codes are changing effective January 3, 2022 as described below. The old codes will no longer be active after this date. A new version of the order form will be available on 01/03/22.

Apart from the changes in the codes, the results for individual tests will include a separate line for each gene target amplified. Currently results from all assay targets are reported in one line. Example reports are available by contacting molmicdx@uw.edu

Note that in order to maintain consistency with current taxonomic nomenclature several battery names have been modified as well. The updated names are reflected in the table below.

Battery Name Old Code New Code
AFB ID by Sequence Analysis AFBSEQ ASEQID
Aspergillus fumigatus DNA detection by PCR ASPPCR ASPDNA
Bacterial DNA detection by PCR BCTPCR BCTDNA
Bacterial ID by Sequence Analysis BCTSEQ BSEQID
Bartonella DNA detection by PCR BRTPCR BRTDNA
Coccidioides DNA detection by PCR COCPCR COCDNA
Cryptococcus neoformans and Cryptococcus gattii DNA detection by PCR CRYPCR CRYDNA
Enterobacterales DNA detection by PCR ENBPCR ENBDNA
Fungal DNA detection by PCR FUNPCR FUNDNA
Histoplasma DNA detection by PCR HISPCR HISDNA
Legionella DNA detection by PCR LEGPCR LEGDNA
Mold ID by Sequence Analysis MLDSEQ MSEQID
Mucorales DNA detection by PCR ZGMPCR MUCDNA
Mycobacterium avium complex DNA detection by PCR MAVPCR MAVDNA
Mycobacterium tuberculosis complex DNA detection by PCR TBCPCR TBCDNA
Mycoplasma DNA detection by PCR MPLPCR MPLDNA
Nontuberculous Mycobacteria DNA detection by PCR NTMPCR NTMDNA
Pneumocystis DNA detection by PCR PNEPCR PNEDNA
Toxoplasma gondii DNA detection by PCR TOXPCR TOXDNA
Tropheryma whipplei DNA detection by PCR TWHPCR TWHDNA
Yeast ID by Sequence Analysis YSTSEQ YSEQID

The following batteries will not change:

  • 16S rRNA Reflexive Next Generation Sequencing (NGS16S)
  • Acanthamoeba and Balamuthia species PCR (AMBPCR)
  • Leishmania species DNA detection by PCR (LSHDNA)
  • Whole Genome Strain Typing (NGSTYP)
  • mecA gene detection (MECPCR)

Associated Tests

Code Name Specimen
AFBSEQ AFB Identification by Sequencing Pure culture (AFB)
ASPPCR Aspergillus fumigatus PCR Tissue (Fresh or paraffin embedded), BAL...
BCTPCR Bacterial DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...
BCTSEQ Bacteria (Non-AFB) Identification by Sequencing Pure Culture (Bacterial)
BRTPCR Bartonella PCR Pure Culture, Tissue
COCPCR Coccidioides species DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...
CRYPCR Cryptococcus neoformans and Cryptococcus gattii DNA detection from direct specimens and identificati Tissue (Fresh or paraffin embedded), Flu...
ENBPCR Detection of bacteria of family Enterobacteriaceae Tissue (fresh or paraffin embedded), flu...
MPLPCR Detection of clinical Mycoplasma Tissue (fresh or paraffin embedded), flu...
FUNPCR Fungal DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), flu...
HISPCR Histoplasma species DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...
LEGPCR Legionella DNA detection by PCR Tissue (Fresh or paraffin embedded), Flu...
MAVPCR M avium complex PCR Tissues (fresh or paraffin embedded), fl...
MLDSEQ Mold Sequencing Pure Culture
TBCPCR MTB complex PCR Tissue (Fresh or paraffin embedded), Flu...
NTMPCR Non Tuberculous Mycobacteria DNA detection from direct specimens and identification by amplification Tissues (fresh or paraffin embedded) and...
PNEPCR Pneumocystis DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...
TOXPCR Toxoplasma gondii DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...
TWHPCR Tropheryma whipplei DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...
YSTSEQ Yeast Sequencing Pure Culture
ZGMPCR Zygomycete species DNA detection from direct specimens and identification by amplification Tissue (Fresh or paraffin embedded), Flu...

Last updated 2021-12-16T20:14:10.924658+00:00